Useful Links🔗
1. About this Document🔗
This document collects the entirety of other document's link into one. Remember, use the firt link below to report documentation issues or request more data of this collection.
2. References🔗
- DCAN Labs ABCD-BIDS MRI processing pipeline on Zenodo
- The minimal preprocessing pipelines for the Human Connectome Project. Glasser, et al. NeuroImage. 2013.
- Correction of respiratory artifacts in MRI head motion estimates. Fair, et al. NeuroImage. 2019.
- Power, J. D., Mitra, A., Laumann, T. O., Snyder, A. Z., Schlaggar, B. L., & Petersen, S. E. (2014). Methods to detect, characterize, and remove motion artifact in resting state fMRI. NeuroImage, 84, 320–41. doi:10.1016/j.neuroimage.2013.08.048
- Gorgolewski, K., Auer, T., Calhoun, V. et al. The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Sci Data 3, 160044 (2016) doi:10.1038/sdata.2016.44
3. Websites & Documentation🔗
- NDA Collection 3165 documentation repository
- NIMH Data Archive (NDA) Collection 3165 - DCAN Labs ABCD-BIDS
- ABCD Fast Track Data explanation on the NDA
- NIMH Data Archive (NDA) collection 2573 - ABCD Fast Track Data
- Developmental Cognition and Neuroimaging (DCAN) Labs
- Adolescent Brain Cognitive Development (ABCD) Study
- ABCD Study Protocol_Imaging_Sequences.pdf
- Brain Imaging Data Structure (BIDS)
- BIDS Apps
- BIDS Extension Proposals (BEPs)
- BEP003
- BEP011
- BEP012
- -NIfTI, CIFTI, GIFTI in the HCP and Workbench: a primer- by Jo Etzel from Washington University in St. Louis
- -A layman’s guide to working with CIFTI files- by Mandy Mejia from Indiana University
4. Software🔗
- DCAN Labs nda-abcd-s3-downloader GitHub repository for downloading BIDS inputs and derivatives from collection 3165 directly
- ABCD repository for downloading and setting up the BIDS dataset (ABCD-STUDY/abcd-dicom2bids)
- Christophe Bedetti's Dcm2Bids GitHub repository
- The Chris Rorden's Lab dcm2niix
- A modified version of the minimal preprocessing pipeline for the Human Connectome Project (HCP)
- ABCD-BIDS pipeline on GitHub
- ABCD-BIDS pipeline on DockerHub
- Advanced Normalization Tools (ANTs)
- FreeSurfer
- DCAN Labs resting state fMRI analysis tools
- BrainSprite
- DCAN-Labs software on GitHub
- Custom Clean
- File Mapper
- DCAN-Labs/cifti-connectivity tools
- Connectome Workbench
- The official BIDS validator